rs29408159 SNP Detail

Summary

• ID
  rs29408159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87688644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA AAGGAAAATA ACAGCAAAAA
  Y
  CAAACCACAT AAGCATACAA AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38715258	mCV22737754	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss132513027	ENSMUSSNP647246	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss323773687	CHEV_11_87611320	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29408159					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87688644 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	1646 bp distal
Rr453905	regulatory region 453905	1592 bp distal
Tssr3633	transcription start site region 3633	1479 bp downstream
Tssr103994	transcription start site region 103994	1944 bp downstream
Tssr103995	transcription start site region 103995	1775 bp downstream
Tssr103996	transcription start site region 103996	1725 bp downstream
Tssr103997	transcription start site region 103997	1555 bp downstream
Tssr103998	transcription start site region 103998	1410 bp downstream
Tssr103999	transcription start site region 103999	487 bp downstream
Tssr104000	transcription start site region 104000	373 bp downstream
Tssr104001	transcription start site region 104001	347 bp downstream
Tssr104002	transcription start site region 104002	325 bp downstream
Tssr104003	transcription start site region 104003	250 bp downstream
Tssr104004	transcription start site region 104004	228 bp downstream
Tssr104005	transcription start site region 104005	201 bp downstream
Tssr109976	transcription start site region 109976	1384 bp upstream
Tssr109977	transcription start site region 109977	448 bp upstream
Tssr109978	transcription start site region 109978	438 bp upstream
Tssr109979	transcription start site region 109979	371 bp upstream
Tssr109980	transcription start site region 109980	196 bp upstream