rs29409001 SNP Detail

Summary

• ID
  rs29409001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68918257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCGGCTT CAAGGCTTTT CTTGTCTTAA GCCTCTGACT
  TTGCCGTCCT CCAAAGTTTA TGGTGCCTCC TTGTATGAGC AACTCGTGTG GAAATGTCAG
  Y
  TAGGACTTCC CTTATACTTA TGGGCTGCCA AGACCCTGGA GGATCTCATC TACAAGTGAG
  GAGGACGGAG TTTGAGGGTC TGGGGTGGAG ATGTTACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38720740	mCV23351329	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132347489	ENSMUSSNP6611392	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss323727062	CHEV_11_68840933	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29409001					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68918257 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	1344 bp proximal
Rr251243	regulatory region 251243	within coordinates
Rr253641	regulatory region 253641	1319 bp proximal
Rr386226	regulatory region 386226	within coordinates
Tssr102357	transcription start site region 102357	1376 bp downstream
Tssr102358	transcription start site region 102358	1346 bp downstream
Tssr102359	transcription start site region 102359	597 bp downstream
Tssr102360	transcription start site region 102360	308 bp downstream
Tssr102361	transcription start site region 102361	95 bp downstream
Tssr102362	transcription start site region 102362	72 bp downstream
Tssr102363	transcription start site region 102363	544 bp upstream