rs29409016 SNP Detail

Summary

• ID
  rs29409016
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73481340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCAT TCTCTTCCTT
  TCCAGTCTCT CATAGTATAG TTAAAAAATC AGGCTTCAGT CAGAAATCTC TGAATGTAGA
  TCCATTCCTA TTTTTCTTAT ATGCTATACA CTATCCAGAA TATATCCTCC ATTCTCCTCC
  TATTTCATCC ATTTCTTTCA GTGAGATTAT AACAACATAT GAGGATCCTA TCTTGTCATT
  W
  CTGGAATACA GAAGCACACT CAATCATGCC CATGTTCTCA TTTCTCCAGA CTCTTCTCCT
  TAAACATGGA TAATTTATAC TGTGGCATTC TAACAGAGTA GTTTCTTCCT ACCTGTTTTG
  AATTAATTTT ACCACTGTTG CTCTGAGGAT AAGGACAATG CTCCTACTAA GGACATACAT
  GCTGTTTTAT TATCTCACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38721897	mCV25082670	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss132425542	ENSMUSSNP890083	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
ss323746745	CHEV_11_73404016	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29409016					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73481340 () rs orientation: forward

Symbol	Name	Function Class
Or1e26	olfactory receptor family 1 subfamily E member 26	778 bp upstream