rs29409189 SNP Detail

Summary

• ID
  rs29409189
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121280845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCACCT AAGAATCACA
  CTCCTTGGCA TGTCTGTGAG GGTGTTTCCA GAGAGCATTG AGGGAGAAAA GATTAAGTAG
  CTGCCATCTT ACATGAAGAT GTACAGACAT TAAGAGGTAC AAGGAGAAGC AGTATCAACT
  GACTGCCTTT CTTTCATCTC AACTGTATAC ATTGTTGCCA TAGCCACCTC CACTGCTATC
  S
  ATCACACTCC AGCTTCCTGT GAGGACTGAA TACTGGTAGC TTTCTAGGAA TCTTCCAGGT
  CTTCAGCATT AGACCTGAAG CTGGGTCATC TTGCTTACTG GGGTATTAGG TTCTCAGCCT
  TTCCATCATG CAAGCTCTAT TGTGTAAGTC AGTCTTATAA ATCACTCTTT ATTTTACACA
  CACACACACA CACACACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38720760	mCV24693221	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss132911636	ENSMUSSNP5572728	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29409189					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121280845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	1497 bp distal
Rab40b	Rab40B, member RAS oncogene family	1768 bp upstream
Tssr112458	transcription start site region 112458	1752 bp upstream