rs29409396 SNP Detail

Summary

• ID
  rs29409396
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5789057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT TTGGTGCCGT CGAGTGAGAA
  W
  GTTTCAGATC CTTGGAACTT GAGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38724378	mCV25062418	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss131639984	ENSMUSSNP283207	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss323549175	CHEV_11_5739060	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29409396					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5789057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	993 bp distal
Polm	polymerase (DNA directed), mu	1041 bp upstream
Rr369123	regulatory region 369123	1114 bp downstream
Rr385539	regulatory region 385539	431 bp upstream
Tssr106647	transcription start site region 106647	1321 bp upstream
Tssr106648	transcription start site region 106648	1299 bp upstream
Tssr106649	transcription start site region 106649	1222 bp upstream