rs29409841 SNP Detail

Summary

• ID
  rs29409841
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62020954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCAGGCAA GAAAGGTTGC ATAGATCAGA AAGCTACAGA
  AAATTGTTTA AAATACCAAT TCAGTATTGC AAAAAGTAGA GAGGGAAAAA AAAGGCATCC
  K
  GATGCATATG GAACAGGGAT TCTGGTGTGC AAATAGCATT TTAGATGGTG AAAACTGTGA
  CCAGAAGCCT ATAGGAATCC AACACTGTTT CCGTGGGGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38724742	mCV23331902	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss132281300	ENSMUSSNP3109356	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29409841					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62020954 () rs orientation: forward

Symbol	Name	Function Class
Gm39985	predicted gene, 39985	within coordinates
Rr448791	regulatory region 448791	1977 bp distal
Rr448793	regulatory region 448793	65 bp proximal
Specc1	sperm antigen with calponin homology and coiled-coil domains 1	within coordinates
Tssr101998	transcription start site region 101998	956 bp upstream