rs29410725 SNP Detail

Summary

• ID
  rs29410725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70909082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCTTTAC ATCTCAAAAA GACCTGTAAT CAGAGATTCC
  CCTACTGGGT TATTTTTTTT GAGACTCTAT TTCACAGGAT TTACTACTTA CTAAACGATA
  Y
  GAAAAAAAAA AAGATAATGA AAACATTAAT CACAGTTGCT ATATAGACCA CTTACTTGAA
  AATGTTTAAA AATTAATTCA GGATTGAAGT ATAACTGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38726088	mCV24105029	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss132379924	ENSMUSSNP2599755	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29410725					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70909082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	708 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1355 bp upstream
Rr369277	regulatory region 369277	1523 bp upstream
Rr402697	regulatory region 402697	949 bp upstream
Rr450471	regulatory region 450471	976 bp proximal
Rr450472	regulatory region 450472	1366 bp proximal
Rr450473	regulatory region 450473	1575 bp proximal
Tssr102806	transcription start site region 102806	1314 bp upstream
Tssr102807	transcription start site region 102807	1337 bp upstream
Tssr102808	transcription start site region 102808	1370 bp upstream
Tssr102809	transcription start site region 102809	1385 bp upstream
Tssr102810	transcription start site region 102810	1612 bp upstream
Tssr102811	transcription start site region 102811	1639 bp upstream
Tssr109052	transcription start site region 109052	242 bp downstream
Tssr109053	transcription start site region 109053	977 bp downstream
Tssr109054	transcription start site region 109054	1014 bp downstream