rs29410747 SNP Detail

Summary

• ID
  rs29410747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70415469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTCCACTGA TGGCCGACTA GGCTATCTTC TGATTCATAT GCAGCTAGAG ACACGAGCTC
  CAGGGGGGGT ATTGGTTAGT TCATATTGTT GTTCTACCTA TAGGATTGCA GATCCCTTCA
  GCTCCTTGAG TACCTTCCCT AGCTCCTCCA TTGGGGGCCC TGTGATCCAT CCAATAGCTG
  ACTGTGAGCA TCCACTTCTG TGTTTGCCAG GCCCCGGCAT AGTTTCACAA GAGACAGCCA
  TATCTGGGTC CTTTTAGCAA AATCTTGCTA GTGTATGCAA TGGTGTCAGC GTTTGGAAGC
  K
  GATTATGGGA TGGATCCCCG GATATGGCAG TTTCTAGATG GTCCATCTTT TCGTCTCAGC
  TCGAATGGCA CGATTTAAAA TGTATTAAAA ATATAATACA TAGGTGAGAA TGTGTAACGG
  TGGAAACCCT CAGATATGGC AGGGGTGATT GTCAAGGGGT ATAGATGCTC CCAAAAAACA
  ATTGTAGCTT CTTCAAAAGT TCTTGTGGGA CCCGGGAAGT AGGTACCCCG GACTATTGAA
  AACACGACCT GACCATTCCA GTTTGTACTC TTATCTTGTG GGTTCTTTGA ACTAGGACAC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38728455	mCV24082122	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29410747					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70415469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	610 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	724 bp upstream
Rr369269	regulatory region 369269	421 bp upstream
Rr450320	regulatory region 450320	1092 bp distal
Rr450321	regulatory region 450321	1053 bp distal
Rr450322	regulatory region 450322	253 bp proximal
Tssr102728	transcription start site region 102728	718 bp upstream
Tssr102729	transcription start site region 102729	1266 bp upstream
Tssr102730	transcription start site region 102730	1311 bp upstream
Tssr102731	transcription start site region 102731	1338 bp upstream