rs29411051 SNP Detail

Summary

• ID
  rs29411051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88863373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG ATATCCAATT GAAACCAGCC
  Y
  TTCCTGTCAG GGTCAGAGAA ACTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss38729301	mCV24310046	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132548868	ENSMUSSNP4846794	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29411051					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88863373 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	110 bp upstream
Coil	coilin	1388 bp upstream
Cpgi3523	CpG island 3523	1199 bp proximal
Gm10367	predicted gene 10367	within coordinates
Rr237596	regulatory region 237596	973 bp distal
Rr247482	regulatory region 247482	827 bp proximal
Tssr104059	transcription start site region 104059	1372 bp upstream
Tssr104060	transcription start site region 104060	1381 bp upstream