rs29411280 SNP Detail

Summary

• ID
  rs29411280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95720008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GCTCAGGAAT TCGAGTTCAT
  K
  CTTATCTACA AAGCACGCCT GAGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38727943	mCV23213451	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss132668212	ENSMUSSNP5135719	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29411280					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95720008 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	892 bp downstream
Cpgi3603	CpG island 3603	1029 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr455200	regulatory region 455200	699 bp distal
Rr455201	regulatory region 455201	1475 bp distal
Rr455202	regulatory region 455202	1499 bp proximal
Tssr3654	transcription start site region 3654	1340 bp upstream
Tssr104394	transcription start site region 104394	1571 bp upstream