rs29411469 SNP Detail

Summary

• ID
  rs29411469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54245169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT TTCAGGTCAG AGCAGGCTGG
  Y
  CTGCTACTTC TTATGTAGCC CAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38727969	mCV24259204	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss132138645	ENSMUSSNP5441489	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss323673805	CHEV_11_54167845	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29411469					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54245169 () rs orientation: forward

Symbol	Name	Function Class
Acsl6	acyl-CoA synthetase long-chain family member 6	within coordinates
Gm12224	predicted gene 12224	808 bp upstream
Rr234591	regulatory region 234591	232 bp proximal
Rr246748	regulatory region 246748	768 bp distal
Tssr107987	transcription start site region 107987	1084 bp upstream
Tssr107988	transcription start site region 107988	1047 bp upstream
Tssr107989	transcription start site region 107989	865 bp upstream