rs29411551 SNP Detail

Summary

• ID
  rs29411551
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115517313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC ACACCTGTAA CCTAGAACCC
  W
  GGAGGCAAGG GCAAGAGGAC TGGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38729425	mCV24681315	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss132877504	ENSMUSSNP317184	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss323863452	CHEV_11_115487801	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29411551					SNP	A	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115517313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	1226 bp proximal
Gm74427	predicted gene, 74427	1928 bp upstream
Rr369445	regulatory region 369445	1115 bp upstream
Rr459966	regulatory region 459966	210 bp distal
Rr459967	regulatory region 459967	1102 bp proximal
Rr459968	regulatory region 459968	1648 bp proximal
Rr459969	regulatory region 459969	1939 bp proximal
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr105892	transcription start site region 105892	1917 bp upstream
Tssr111780	transcription start site region 111780	1215 bp downstream
Tssr111781	transcription start site region 111781	1240 bp downstream
Tssr111782	transcription start site region 111782	1256 bp downstream
Tssr111783	transcription start site region 111783	1274 bp downstream
Tssr111784	transcription start site region 111784	1606 bp downstream
Tssr111785	transcription start site region 111785	1638 bp downstream
Tssr111786	transcription start site region 111786	1746 bp downstream
Tssr111787	transcription start site region 111787	1773 bp downstream