rs29411640 SNP Detail

Summary

• ID
  rs29411640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68917902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGTCTTGTC TTGTCTTGTC TTGTCTTGTT CCAGACAGGG ATTTTCCAAA GTTTAGTTGT
  TGTGAGCCAC CCATAGTGGG TACTAGAACT GAACTTGAGT CCTATTCAAG AGTAATACTT
  TTCTTTTAAC TGCTGAGCCA TCTCTCCAGC CTTTAGGTAG TTTTTTGTCT TGTTTGTTTT
  GAGACAGGGT CTCACTTGGA AGCCTTGGCC AATCTGAGAC TTGCTATGTA AACTAAGTTG
  GTCTAAACCT CAAATCCCCT TCCTCTGATC TGGAGTGCTG CAGTTACAAG CATGTTTTTT
  Y
  TTTTTTGTTT TTGTTTTTTT TGTTTTAGAT CACAGTAGCT CAAACTGGCC TCAAGCCTCT
  GTGTAGCCAA AAATGGCCCT TTATCTTCGA GTCTTCCTGC CTCTGCCTGC CAAGGGCTGG
  GATTTACAGG CATGTGCTAC GTACTCAGCT TACCTCTGCT TTTCTGTTTT CCTGCAGCTC
  CGAGATGTTC ATCTCCTCCA GGCAGTGGGT GGAGCAACAA CAAAACCTGT CCTGGCGCTC
  TGTCTCCATG GCACTGTTCG GCTTCAAGGC TTTTCTTGTC TTAAGCCTCT GACTTTGCCG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38728005	mCV23351045	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29411640					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68917902 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	1699 bp proximal
Rr251243	regulatory region 251243	within coordinates
Rr253641	regulatory region 253641	1674 bp proximal
Rr386226	regulatory region 386226	within coordinates
Tssr102357	transcription start site region 102357	1021 bp downstream
Tssr102358	transcription start site region 102358	991 bp downstream
Tssr102359	transcription start site region 102359	242 bp downstream
Tssr102360	transcription start site region 102360	12 bp upstream
Tssr102361	transcription start site region 102361	218 bp upstream
Tssr102362	transcription start site region 102362	264 bp upstream
Tssr102363	transcription start site region 102363	899 bp upstream