rs29412410 SNP Detail

Summary

• ID
  rs29412410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7161083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA ACAGATTAAT TGAATCTAAG
  Y
  ATGTGACTAA ATTTGTGGCT GACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss38731508	mCV25196201	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss131649920	ENSMUSSNP2046391	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs29412410					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7161083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	1961 bp proximal
Gm73927	predicted gene, 73927	1240 bp downstream
Igfbp3	insulin-like growth factor binding protein 3	Intron
Rr442458	regulatory region 442458	within coordinates
Rr442459	regulatory region 442459	544 bp distal
Rr442460	regulatory region 442460	1608 bp proximal
Tssr100303	transcription start site region 100303	1060 bp downstream
Tssr106774	transcription start site region 106774	1571 bp upstream
Tssr106775	transcription start site region 106775	889 bp upstream