rs29412476 SNP Detail

Summary

• ID
  rs29412476
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG AGCCCCTGGC AACAGATCAC
  W
  GTCTGTCACC CGCTGGCTCT CCTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38732324	mCV23357626	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss132359120	ENSMUSSNP2730430	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss323730630	CHEV_11_69412882	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29412476					SNP	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490206 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	356 bp downstream
Gm72066	predicted gene, 72066	349 bp upstream
Rr386229	regulatory region 386229	27 bp upstream
Rr450033	regulatory region 450033	168 bp proximal
Rr450034	regulatory region 450034	209 bp proximal
Rr450035	regulatory region 450035	661 bp proximal
Tssr3544	transcription start site region 3544	1315 bp downstream
Tssr102487	transcription start site region 102487	633 bp upstream
Tssr102488	transcription start site region 102488	1783 bp upstream
Tssr102489	transcription start site region 102489	1858 bp upstream
Tssr108712	transcription start site region 108712	627 bp downstream
Tssr108713	transcription start site region 108713	772 bp downstream
Tssr108714	transcription start site region 108714	854 bp downstream
Tssr108715	transcription start site region 108715	867 bp downstream
Tssr108716	transcription start site region 108716	1179 bp downstream
Tssr108717	transcription start site region 108717	1204 bp downstream
Tssr108718	transcription start site region 108718	1263 bp downstream
Tssr108719	transcription start site region 108719	1274 bp downstream
Tssr108720	transcription start site region 108720	1278 bp downstream
Tssr108721	transcription start site region 108721	1292 bp downstream
Tssr108722	transcription start site region 108722	1373 bp downstream
Tssr108723	transcription start site region 108723	1401 bp downstream
Tssr108724	transcription start site region 108724	1454 bp downstream
Tssr108725	transcription start site region 108725	1478 bp downstream
Tssr108726	transcription start site region 108726	1573 bp downstream
Tssr108727	transcription start site region 108727	1595 bp downstream
Tssr108728	transcription start site region 108728	1639 bp downstream
Tssr108729	transcription start site region 108729	1726 bp downstream
Tssr108730	transcription start site region 108730	1758 bp downstream
Tssr108731	transcription start site region 108731	1789 bp downstream
Tssr108732	transcription start site region 108732	1850 bp downstream