rs29412809 SNP Detail

Summary

• ID
  rs29412809
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51179589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CAGAATATTT GTTGGGCACA
  S
  GCACAGTTTT CACACAGGGC CAAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38733176	mCV22643654	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss132120093	ENSMUSSNP709402	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29412809					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51179589 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	1158 bp upstream
Cpgi2834	CpG island 2834	836 bp proximal
Rr446561	regulatory region 446561	711 bp proximal
Rr446562	regulatory region 446562	1660 bp proximal
Tssr101277	transcription start site region 101277	976 bp upstream
Tssr101278	transcription start site region 101278	1206 bp upstream