rs29412838 SNP Detail

Summary

• ID
  rs29412838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95724380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAAACCTGG TGGGGGCGGA GGCAGCAGCC CCAGTTCATC CCCCTCTAGA GCTGGGGGAG
  GAGGCAGGGG CAACTCTGCT TCTGGGAAGG AAGACAAAAG GGTTCGTGTA AAGGAAAGTG
  GGCCAACCCT GCAGCATCCT CAAGCTCTAA CCAGTTCCTG TCATCACTCA TAATGCCTCT
  AGCCAGACTC AGCACAGGGT AGACAGATCC TACGGGACAA CACCTAGGCA GCTGGCTTAA
  GCTATAAAGG TTCCGTTAAG TGAGAAGCTT CAAAAACAGG GCTAGTGTAA AATAGTCTAT
  Y
  TACTGCTTCT CTGGGGTCCC TGAGGAGCAC AGGGCTGAAT GAGAGAGACT CAAAGTGAAT
  ACTGAGAAGG CAGGACCCAT CTTACCCAGA GGGGGCTGGG ACACCTCCAG CGGAGGGGGC
  GGCAAGAAGA CCTCGGCAGA CAACGGTGGA GGAGGCGGGG TTACAGGTGC TACAGGTGGA
  GGAGGCGGGG TTGCAGGCGC TACCTGTCCC TTGGACTGGG GGATCCCACT GGCACCTTCC
  GCACTGCTAA AAGACCAGAT TATATGCTGA TTAGGGACGG ACGCCTTCTA GCCCAGCGTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38732966	mCV23213500	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29412838					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95724380 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	1989 bp distal
Cpgi3604	CpG island 3604	117 bp proximal
Phospho1	phosphatase, orphan 1	1414 bp downstream
Rr369341	regulatory region 369341	124 bp downstream
Rr369342	regulatory region 369342	689 bp upstream
Rr455203	regulatory region 455203	1641 bp distal
Tssr110283	transcription start site region 110283	1731 bp upstream
Tssr110284	transcription start site region 110284	562 bp downstream
Tssr110285	transcription start site region 110285	581 bp downstream
Tssr110286	transcription start site region 110286	614 bp downstream
Tssr110287	transcription start site region 110287	1791 bp downstream