rs29413579 SNP Detail

Summary

• ID
  rs29413579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70911031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTACTGCAT GCTTACTTGA AGGAAAGAAA ATAGAATTAG
  ATTGGGCTGG AGCAAAGACT ATCCTGACCG TGGCAGACGT GTTCAGTAAG TTATAAAGAA
  R
  CTTTAAAAAT TGTGGGACAA AAAAATGCGA CCGTCAAGAC TGGTAGGAAC CAAGTAAAAA
  GTTGGAGAGA ATGGCATTTA GAAGGAAGAC TAGAAAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38736338	mCV24105054	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss323738911	CHEV_11_70833707	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29413579					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70911031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	99 bp distal
Derl2	Der1-like domain family, member 2	364 bp upstream
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	239 bp downstream
Rr402697	regulatory region 402697	699 bp downstream
Rr450471	regulatory region 450471	584 bp distal
Rr450472	regulatory region 450472	375 bp distal
Rr450473	regulatory region 450473	within coordinates
Tssr102806	transcription start site region 102806	626 bp downstream
Tssr102807	transcription start site region 102807	588 bp downstream
Tssr102808	transcription start site region 102808	567 bp downstream
Tssr102809	transcription start site region 102809	552 bp downstream
Tssr102810	transcription start site region 102810	317 bp downstream
Tssr102811	transcription start site region 102811	267 bp downstream
Tssr109052	transcription start site region 109052	1684 bp upstream
Tssr109053	transcription start site region 109053	938 bp upstream
Tssr109054	transcription start site region 109054	915 bp upstream