rs29413739 SNP Detail

Summary

• ID
  rs29413739
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29121694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTAGAGTG GGCAATGAAA AGGATGCTTA GACAAATCCT
  TGGGTGTCCT CTAACATTGG GCTAAAACAC TGACTCTGGA AAGCTTTCTA TGGCCTTCCC
  M
  AAACAAGTCA TATTTTCCCT GGTTCAAAGT ACATTTTGTC CATATCAGTC ACAGATTATC
  AGGGACTTAT GTATAGTGAT TCACGTCCTT TTATCATAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38735780	mCV24536213	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss131889922	ENSMUSSNP6617381	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29413739					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29121694 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	within coordinates
Cpgi2670	CpG island 2670	251 bp proximal
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	1196 bp upstream
Rr369144	regulatory region 369144	988 bp upstream
Rr444150	regulatory region 444150	706 bp proximal
Rr444151	regulatory region 444151	1798 bp proximal
Tssr100691	transcription start site region 100691	1219 bp upstream
Tssr100692	transcription start site region 100692	1240 bp upstream
Tssr100693	transcription start site region 100693	1254 bp upstream
Tssr107208	transcription start site region 107208	1033 bp downstream