rs29413841 SNP Detail

Summary

• ID
  rs29413841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44510853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CGTAGTCGGA GCCTATTCCC
  R
  CGCCCTGGCC TTCGAAGTAG TAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38735217	mCV24316359	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss132082949	ENSMUSSNP2414297	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss323654521	CHEV_11_44433528	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29413841					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44510853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2763	CpG island 2763	1397 bp distal
Cpgi2764	CpG island 2764	within coordinates
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	434 bp distal
Ebf1	early B cell factor 1	within coordinates
Rr445654	regulatory region 445654	1310 bp distal
Tssr3469	transcription start site region 3469	791 bp upstream
Tssr3470	transcription start site region 3470	1584 bp upstream
Tssr101041	transcription start site region 101041	1891 bp downstream
Tssr101042	transcription start site region 101042	1822 bp downstream
Tssr101043	transcription start site region 101043	1803 bp downstream
Tssr101044	transcription start site region 101044	1435 bp downstream
Tssr101045	transcription start site region 101045	1124 bp upstream
Tssr101046	transcription start site region 101046	1156 bp upstream
Tssr101047	transcription start site region 101047	1170 bp upstream
Tssr101048	transcription start site region 101048	1185 bp upstream
Tssr107570	transcription start site region 107570	1957 bp upstream