rs29413892 SNP Detail

Summary

• ID
  rs29413892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104123761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTT TCATTCGACG AGGATATTTG
  Y
  CTACGCACTC GGAGCAGCTC CATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38735327	mCV24642323	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss132752565	ENSMUSSNP5051205	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29413892					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104123761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3985	CpG island 3985	within coordinates
Cpgi3986	CpG island 3986	861 bp proximal
Gm53648	predicted gene, 53648	520 bp downstream
Gm72530	predicted gene, 72530	1121 bp upstream
Mapt	microtubule-associated protein tau	within coordinates
Rr457760	regulatory region 457760	1341 bp distal
Rr457761	regulatory region 457761	1580 bp distal
Rr457762	regulatory region 457762	1132 bp distal
Rr457763	regulatory region 457763	631 bp distal
Rr457764	regulatory region 457764	748 bp distal
Rr457765	regulatory region 457765	531 bp distal
Rr457766	regulatory region 457766	269 bp distal
Rr457767	regulatory region 457767	370 bp proximal
Tssr3695	transcription start site region 3695	1396 bp downstream
Tssr105373	transcription start site region 105373	1482 bp downstream
Tssr105374	transcription start site region 105374	1428 bp downstream
Tssr105375	transcription start site region 105375	1407 bp downstream
Tssr105376	transcription start site region 105376	1358 bp downstream