rs29414226 SNP Detail

Summary

• ID
  rs29414226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93776307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGCCCG CTCGGCAGGC
  AGGCAGGCGG GCAGGCAGGC AGGCCTTCCT CACCCGCGAG CTCCGCAGCC GCTGCAGCAG
  CGCGTCCTCG TCGTCCTCGA CATCGCCGAA GACGAGCTGC TCCAGGCAAC GCTCGGCGGC
  CGGCTTATCG TCCTCTAGCG TCAGGCGGTT CCGCTGCCGG AGCCGGCTCT CCTCCTCCTC
  Y
  GCCGCCGCCG CCGCGGATCC CGCGCTAGGG GCCGCCCTCG GCTCGGCCGG CTGTGTCCGT
  TGGGATGAAC GGGCGGCCTT TGCGGGCGTG CTGCCGCTCC CGGGTCTGGC TTTCCTCCCC
  GGCGTTGCGC CGGCTCTCCG GTCTCGTCTC GTCCGGCTCT TGCGTTCGGG CGGCATCCTC
  AGGGCTGAGG GGAAAACGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38738367	mCV22887083	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss132628020	ENSMUSSNP1368388	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss323810024	CHEV_11_93746795	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29414226					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93776307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	within coordinates
Gm72169	predicted gene, 72169	847 bp downstream
Mbtd1	mbt domain containing 1	371 bp upstream
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	203 bp upstream
Tssr3641	transcription start site region 3641	343 bp upstream
Tssr104149	transcription start site region 104149	340 bp downstream
Tssr104150	transcription start site region 104150	192 bp downstream
Tssr104151	transcription start site region 104151	403 bp upstream
Tssr104152	transcription start site region 104152	656 bp upstream
Tssr104153	transcription start site region 104153	676 bp upstream
Tssr104154	transcription start site region 104154	748 bp upstream
Tssr104155	transcription start site region 104155	764 bp upstream
Tssr110106	transcription start site region 110106	1216 bp upstream
Tssr110107	transcription start site region 110107	179 bp downstream
Tssr110108	transcription start site region 110108	243 bp downstream
Tssr110109	transcription start site region 110109	271 bp downstream
Tssr110110	transcription start site region 110110	610 bp downstream
Tssr110111	transcription start site region 110111	1021 bp downstream
Utp18	UTP18 small subunit processome component	within coordinates