rs29414302 SNP Detail

Summary

• ID
  rs29414302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118311246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACT GAGCCCCAGT GAGTCCCAGG
  R
  AGCTCTAGTA CCCCTTGCAC CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38735071	mCV24191036	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss132901487	ENSMUSSNP2732808	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323870313	CHEV_11_118281734	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29414302					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118311246 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	1334 bp upstream
Cpgi4233	CpG island 4233	945 bp distal
Gm35598	predicted gene, 35598	1710 bp downstream
Gm72450	predicted gene, 72450	546 bp downstream
Rr403174	regulatory region 403174	1244 bp downstream
Rr461045	regulatory region 461045	1408 bp distal
Rr461046	regulatory region 461046	1323 bp distal
Rr461047	regulatory region 461047	652 bp distal
Tssr106139	transcription start site region 106139	1169 bp downstream
Tssr112169	transcription start site region 112169	1405 bp upstream
Tssr112170	transcription start site region 112170	1374 bp upstream
Tssr112171	transcription start site region 112171	1289 bp upstream