rs29414321 SNP Detail

Summary

• ID
  rs29414321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75456282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTAGATCT AGATGAGCCT TGCTCGCTGC TGTTTAGCCT CTCCAGGTAC CTGCCTGCTT
  TAGTCTCCTG TAGCTATGAC TACAAGTGTG AACCACCCTA CCTAGTAGAA CATTTTTTGT
  TTTTGTTTTG TTTTGTTTTG TTTTGTTTTG TTTTTGAGAT GTGGTAGACT AGGCTGGCAT
  GGGACTTACT TGGTAGACAG GGTTGGCTTC AGACAGTAGG TGGTCCTCCT GTCTCAGCCC
  GGGACTGGAA CTACGTCACA CGCAGCTTAA TCTTCTGGTA TTTCACTGAA ATAAAAAAAC
  Y
  TTTTGATGGG ACCAACTCAG CAGGAAGAGA TGCTTGCTGC TAGCGTGGAA GTAGCACACA
  GTGGTCAGGA GTTGGTTCTC TTCTTCCCCT GTGCATTCAA TATCCAGCAC TCAGGTGGCA
  GAGGCAGGTG AATCTCTGTG GGTTCAAGGC CAGCCTGGTC TACAGAGCGA ATTTTATCTA
  GGGTAGCCAT GGCTACACAG AGACACCCTG TCTTAAAAAA GACAAAACGG GGGGAGGAGG
  GGGATGGAAA TCCTGATACA CTCCCACAAT CTCAGGGACT AGGCAGAGTG AGGCAGGAAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38740800	mCV22729094	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132438529	ENSMUSSNP2353320	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323751027	CHEV_11_75378958	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29414321					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75456282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			1562 bp distal
Rr451208	regulatory region 451208			770 bp distal
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			1790 bp downstream
Tssr102978	transcription start site region 102978			1403 bp upstream