rs29415176 SNP Detail

Summary

• ID
  rs29415176
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9823318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGAAGC TGTACAACAC
  TCTACTCAAT GATAACTTAG TCAAGGAAGA AATAAAGAAA GAAATTGAAG ACTTTTAAAG
  TTCAATGAAA ATGAAGCCAC AACATACCCA AACTTATGGG ACACAATGAA AGCAGTCCTA
  TGAGGAAAAC TCATAGCTCT GAGTGCCTCC AAAAAGAAAC AAGAGAGAGT ATACACTAGC
  M
  GCTTGAAAGC TAGTGTACCT AGCACACCTG AAAGCTCTAG AACAAAAAGA AGCAAATTTA
  CCCAAGAGGA GTAGACAGCA GGAAATAATC AAACTCAGGG TTGATATAAA CCTATTGAAA
  ACAAAAAGAA CTATACAAAG AATCAACCAA ACCAGGACTT GGTTCTTTTA GAAAATCAAC
  AAAATAGATA AACCCTTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38734489	mCV22917853	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss131676069	ENSMUSSNP1524303	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29415176					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9823318 () rs orientation: forward

Symbol	Name	Function Class
Tssr106858	transcription start site region 106858	419 bp downstream
Tssr106859	transcription start site region 106859	490 bp downstream