rs29415354 SNP Detail

Summary

• ID
  rs29415354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117705097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAC TAGTTTGGAG ATGGAATAAA
  Y
  GGTTTTTCTC AGCGTGTTGT GCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss38742462	mCV22688219	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss132898461	ENSMUSSNP2114887	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323869597	CHEV_11_117675585	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29415354					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117705097 () rs orientation: forward

Symbol	Name	Function Class
Gm20708	predicted gene 20708	within coordinates
Rr460821	regulatory region 460821	within coordinates
Rr460822	regulatory region 460822	618 bp proximal
Syngr2	synaptogyrin 2	within coordinates
Tk1	thymidine kinase 1	1255 bp downstream
Tssr106080	transcription start site region 106080	968 bp downstream
Tssr106081	transcription start site region 106081	850 bp downstream
Tssr106082	transcription start site region 106082	807 bp downstream
Tssr106083	transcription start site region 106083	592 bp downstream
Tssr106084	transcription start site region 106084	535 bp downstream
Tssr106085	transcription start site region 106085	505 bp downstream
Tssr106086	transcription start site region 106086	436 bp downstream
Tssr112040	transcription start site region 112040	834 bp upstream
Tssr112041	transcription start site region 112041	805 bp upstream
Tssr112042	transcription start site region 112042	776 bp upstream
Tssr112043	transcription start site region 112043	501 bp upstream