rs29415915 SNP Detail

Summary

• ID
  rs29415915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71639853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGAATCGC GAGGAGTGCA TCTGGAGGTT CTCAGGGCTG
  TCCTCACTGC AACCCTTGGG CAACCATCTC CTTTTGTGCA TCAAGAGCAT TGTCTTTGAA
  R
  TGGATGCAAA TGAAGGTAGT TTGTCATAAC TATTAAGTGG GACAAAGGAT ATAAGAGGGT
  CATGGGTGAC TTCATGGACT TACGGCCTGT GCAAGACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38740245	mCV23438285	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132393488	ENSMUSSNP3876497	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323743706	CHEV_11_71562529	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29415915					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71639853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	1391 bp proximal
Rr236016	regulatory region 236016	548 bp proximal
Rr241547	regulatory region 241547	53 bp distal
Rr247127	regulatory region 247127	747 bp proximal
Tssr102813	transcription start site region 102813	887 bp upstream
Tssr102814	transcription start site region 102814	1653 bp upstream
Tssr102815	transcription start site region 102815	1955 bp upstream
Tssr102816	transcription start site region 102816	1971 bp upstream
Wscd1	WSC domain containing 1	893 bp upstream