rs29416056 SNP Detail

Summary

• ID
  rs29416056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69805695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATGATGG AACAGAAGAT GAAAGAAGAG CAGGAGAGAA
  GAAAGAAAAA GGAAATGGAA GAGAGAATGT CACTAGAGGA GACCAAGGAA CAGGTAAGTA
  R
  CCTCTCCACA CTTGTTTCTC GATGCCTTCT TTTCCCTGCT TTAGCTGCTC GTCCCTCTTC
  CAGATCCTGA AGCTGCAGGA GAAGCTTTCT GCTCTACAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38735497	mCV23933433	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss323732165	CHEV_11_69728371	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29416056					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69805695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	160 bp distal
Eif5a	eukaryotic translation initiation factor 5A	1845 bp downstream
Gm72765	predicted gene, 72765	1843 bp upstream
Gps2	G protein pathway suppressor 2	within coordinates
Neurl4	neuralized E3 ubiquitin protein ligase 4	1047 bp downstream
Rr235842	regulatory region 235842	906 bp proximal
Rr247070	regulatory region 247070	within coordinates
Rr402680	regulatory region 402680	781 bp downstream
Tssr102552	transcription start site region 102552	791 bp downstream
Tssr102553	transcription start site region 102553	706 bp downstream
Tssr102554	transcription start site region 102554	676 bp downstream
Tssr102555	transcription start site region 102555	603 bp downstream
Tssr102556	transcription start site region 102556	572 bp downstream
Tssr102557	transcription start site region 102557	1171 bp upstream