rs29416090 SNP Detail

Summary

• ID
  rs29416090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67575743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT GCTCAGCATG AACTGTGACA
  Y
  CAGCCTTTGA TAGTAGGACA TTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38743890	mCV24738330	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132331026	ENSMUSSNP1707694	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323721085	CHEV_11_67498419	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29416090					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67575743 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	within coordinates
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102274	transcription start site region 102274	1386 bp downstream
Tssr102275	transcription start site region 102275	1008 bp downstream
Tssr102276	transcription start site region 102276	694 bp downstream
Tssr102277	transcription start site region 102277	282 bp downstream
Tssr102278	transcription start site region 102278	230 bp downstream
Tssr102279	transcription start site region 102279	132 bp upstream
Tssr102280	transcription start site region 102280	1727 bp upstream