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rs29416308 SNP Detail
Summary
  • ID
    rs29416308
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:83600856 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATCGTGCTCT GGCAACATGA AGTGCTGCAG CAATGGCTGT
    GGTCATGCCT GCAAACCTCC TGTCTTTTAA GTGAGTATAG TCCTACTTCT TACTTTTCTA
    Y
    TGTTGTGATG AGGCACAATG TCCTAGGAAA CTTATAAAAG AAGATTTATT GGGGGTTTAC
    AATTTCAGAG AGTGAGTCCA TGACTTTCAT GGTGGAAAG                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss38736903 mCV23453967 ABI CRAMUS_MOUSE f SNP T T C
ss132473475 ENSMUSSNP2727309 ENSEMBL ENSEMBL_Sanger f SNP T C
ss323768122 CHEV_11_83523532 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs29416308 SNP T T C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:83600856 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Tssr103748 transcription start site region 103748 934 bp downstream
Tssr103749 transcription start site region 103749 914 bp downstream
Tssr103750 transcription start site region 103750 1194 bp upstream
Tssr103751 transcription start site region 103751 1206 bp upstream
Wfdc18 WAP four-disulfide core domain 18 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory