rs29416370 SNP Detail

Summary

• ID
  rs29416370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115517008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG TCTAAGAGGG GAAGAAGAGA
  Y
  AGCAAAGATG CAGGCCTCCT GGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss38739713	mCV24680611	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132877492	ENSMUSSNP1366987	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss323863450	CHEV_11_115487496	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29416370					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115517008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	1531 bp proximal
Rr369445	regulatory region 369445	1420 bp upstream
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr111780	transcription start site region 111780	1520 bp downstream
Tssr111781	transcription start site region 111781	1545 bp downstream
Tssr111782	transcription start site region 111782	1561 bp downstream
Tssr111783	transcription start site region 111783	1579 bp downstream
Tssr111784	transcription start site region 111784	1911 bp downstream
Tssr111785	transcription start site region 111785	1943 bp downstream