rs29416390 SNP Detail

Summary

• ID
  rs29416390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71639387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTGCCAGT GGATCTTAGC TATGTGGCAA GGAGATCTAG
  GCACAGGGAG GGGCTTGGCA TGGTTTGAAA GGGGTGTTGC TATCAGGGCT ACCCAAGCTG
  R
  CTTCTTGAAC CTTTATCTGC AACCAGTGCT AAAGAGGAAG GCTTTATTCC AACACAGAAA
  TACTCATGCC CATTTTGACA CCCAAACTGC CTTTCCCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38737298	mCV23438290	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss132393480	ENSMUSSNP5724882	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss323743704	CHEV_11_71562063	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29416390					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71639387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	1857 bp proximal
Rr236016	regulatory region 236016	1014 bp proximal
Rr241547	regulatory region 241547	within coordinates
Rr247127	regulatory region 247127	1213 bp proximal
Tssr102813	transcription start site region 102813	1353 bp upstream
Wscd1	WSC domain containing 1	1359 bp upstream