rs29416821 SNP Detail

Summary

• ID
  rs29416821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71642468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGTCGGGCT GAGGGCAGGT TTTGGGGTGC GCACAGCCTC
  CCTCCTAGGT GGAGACGTTC GTCAGAAGCT GCTCCCCCCT CTCTCGTTCC ATTCCCAAGC
  Y
  AGGCTTCCGG TCAGCGAAGG GTTTTCTCCG GTCTCTTGAT GAACTTGAAC ACAGGCAGAG
  GCAAAACAGA AACGTATGTA TTTTGTTGGA AGAAATTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss38741319	mCV23438014	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss132393511	ENSMUSSNP516846	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss323743713	CHEV_11_71565144	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs29416821					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71642468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	within coordinates
Rr236016	regulatory region 236016	1468 bp distal
Rr236017	regulatory region 236017	933 bp proximal
Rr247127	regulatory region 247127	within coordinates
Tssr102813	transcription start site region 102813	1705 bp downstream
Tssr102814	transcription start site region 102814	951 bp downstream
Tssr102815	transcription start site region 102815	647 bp downstream
Tssr102816	transcription start site region 102816	603 bp downstream
Tssr102817	transcription start site region 102817	583 bp downstream
Wscd1	WSC domain containing 1	within coordinates