rs29416828 SNP Detail

Summary

• ID
  rs29416828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115056795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC AATATTGCAA AATGTGCCAA
  Y
  AAACACCAAG GAATCCCTTT CCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38737314	mCV22627805	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss132871982	ENSMUSSNP6138098	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss323861543	CHEV_11_115027283	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29416828					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115056795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1640 bp distal
Cpgi4110	CpG island 4110	835 bp distal
Gm72084	predicted gene, 72084	1647 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459784	regulatory region 459784	1157 bp distal
Rr459785	regulatory region 459785	1379 bp distal
Rr459786	regulatory region 459786	892 bp proximal