rs29417027 SNP Detail

Summary

• ID
  rs29417027
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTCCTG AGCACCTCTG
  ATACATTGGT TAGCCCTCAC TGCAGCTCTG AGAGGTAGAT GTTAGCATTT ACCTTCATCT
  TACAAATGAA ACCCTGGGAC CTAGCAGAGG TAACTCACCC CATCCCACCA CTGTTGGGTA
  GGGGGACCGT GATTTGTACC TGTTGTGTTG GTTCCAGAAG CCCTGTTGCT AACCTAGTTA
  S
  TGTTGTAACT CCTGCCCCAT CTAAGTTATC CCTAAAGATG GAGCTGCCTT GTAGATATTT
  TGGCTCAGAT GGTATAAGCA GTACATTTAA TGCTTAAAAT ATTTTCATAA GCAACCGGGG
  GGTGAAGGGA ATGACTCACT TGGTAAAGTG TATGCTGTGC AGACATTAGG ACCTGAGTTT
  AGACACCCAG CACCTACATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38737953	mCV24752485	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss132681484	ENSMUSSNP5304938	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss323821009	CHEV_11_96405214	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29417027					SNP	G	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434726 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	127 bp distal
Rr252639	regulatory region 252639	1876 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1466 bp downstream
Tssr104543	transcription start site region 104543	819 bp upstream
Tssr104544	transcription start site region 104544	1473 bp upstream
Tssr104545	transcription start site region 104545	1526 bp upstream
Tssr104546	transcription start site region 104546	1534 bp upstream
Tssr104547	transcription start site region 104547	1576 bp upstream
Tssr104548	transcription start site region 104548	1670 bp upstream
Tssr104549	transcription start site region 104549	1683 bp upstream
Tssr104550	transcription start site region 104550	1741 bp upstream
Tssr104551	transcription start site region 104551	1769 bp upstream
Tssr104552	transcription start site region 104552	1790 bp upstream