rs29417244 SNP Detail

Summary

• ID
  rs29417244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70910612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTGGGGC GGAATCCATC ACTCCCGGGA TCGCTTCGGT
  AGGGGCTGTG TGCTCTCCGA GGAGGAGCGG AAAGGGCGGG ACCGAGGAGT GGCGTCGGGG
  Y
  GGCGGAGCGT TCTGTAGGGA ATCCCTCCGG TCTGGCCGGC CTGGGTACGG AGACCTAGAG
  TTCCCGGCAT GCATCGCGGC CGCGGGGTAG TACGGGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38737551	mCV24105043	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132379940	ENSMUSSNP5520640	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323738907	CHEV_11_70833288	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29417244					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70910612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	within coordinates
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	within coordinates
Rr402697	regulatory region 402697	280 bp downstream
Rr450471	regulatory region 450471	165 bp distal
Rr450472	regulatory region 450472	within coordinates
Rr450473	regulatory region 450473	45 bp proximal
Tssr102806	transcription start site region 102806	207 bp downstream
Tssr102807	transcription start site region 102807	169 bp downstream
Tssr102808	transcription start site region 102808	148 bp downstream
Tssr102809	transcription start site region 102809	133 bp downstream
Tssr102810	transcription start site region 102810	82 bp upstream
Tssr102811	transcription start site region 102811	109 bp upstream
Tssr109052	transcription start site region 109052	1265 bp upstream
Tssr109053	transcription start site region 109053	519 bp upstream
Tssr109054	transcription start site region 109054	496 bp upstream