rs29418018 SNP Detail

Summary

• ID
  rs29418018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88900745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA ATCGCCCTTT CTATTAATTC
  R
  ACTGGTTGAA GATCTTCATT GTTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38746290	mCV22658221	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss132549875	ENSMUSSNP2195057	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss323783758	CHEV_11_88871233	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29418018					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88900745 () rs orientation: forward

Symbol	Name	Function Class
Rr454279	regulatory region 454279	46 bp distal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104065	transcription start site region 104065	1790 bp downstream
Tssr104066	transcription start site region 104066	974 bp upstream
Tssr104067	transcription start site region 104067	1050 bp upstream