rs29418032 SNP Detail

Summary

• ID
  rs29418032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116744702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG GGTCTCCTCT GCACTCGGTC
  R
  CGTCCCCGGA GGGTCCCGAC TGTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38745896	mCV22643635	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132892191	ENSMUSSNP1519477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323867030	CHEV_11_116715190	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29418032					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116744702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	within coordinates
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	581 bp downstream
Rr403147	regulatory region 403147	29 bp downstream
Srsf2	serine and arginine-rich splicing factor 2	782 bp upstream
Tssr106000	transcription start site region 106000	1656 bp downstream
Tssr106001	transcription start site region 106001	1302 bp downstream
Tssr106002	transcription start site region 106002	604 bp downstream
Tssr106003	transcription start site region 106003	395 bp downstream
Tssr106004	transcription start site region 106004	40 bp downstream
Tssr112005	transcription start site region 112005	1723 bp upstream
Tssr112006	transcription start site region 112006	1684 bp upstream
Tssr112007	transcription start site region 112007	1618 bp upstream
Tssr112008	transcription start site region 112008	1512 bp upstream
Tssr112009	transcription start site region 112009	1420 bp upstream
Tssr112010	transcription start site region 112010	777 bp upstream