rs29418598 SNP Detail

Summary

• ID
  rs29418598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6337629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGTCAC AAAGCTGAGT
  GAAGTATGCG GGCCTCAACA CCACAAAGCC TGTGGTTCAA CTGAGATGAG GTTCTCAAGT
  CAAATGCAGG TGCACGGTTG AATGGAGTGA GCTGGAGAAG CACAGGGTTA TTATGGAACG
  CAGTGGCTCG CAACTCAGGA GTCTGGGCTC CTTCCGCGGT TACAGAGCAG ATGGATATCT
  Y
  GCATATCCAA TATTTATGAT TCCTAACAGT AGCAAAATTA CAGTTATGAC GTAGCAACAA
  AGTAATTGTA TGGTTGGGGT CACCATCACA TGAGGAACTA TATTAAAGGA CCCCAGCATT
  AGGAAGGCTG ATTTAATGGA TAGAGTGTTT TCTGGAGAAG ATAAAATCAC CCTGGAGCTA
  GATAGTGGTT ATAGGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38748539	mCV22932797	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss131642772	ENSMUSSNP2119950	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29418598					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6337629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	1182 bp proximal
Rr244660	regulatory region 244660	1598 bp distal
Rr246943	regulatory region 246943	971 bp proximal
Tssr100241	transcription start site region 100241	1432 bp upstream
Tssr100242	transcription start site region 100242	1456 bp upstream
Tssr100243	transcription start site region 100243	1488 bp upstream
Tssr100244	transcription start site region 100244	1701 bp upstream
Tssr100245	transcription start site region 100245	1799 bp upstream
Tssr100246	transcription start site region 100246	1813 bp upstream
Tssr100247	transcription start site region 100247	1924 bp upstream
Tssr100248	transcription start site region 100248	1947 bp upstream
Zmiz2	zinc finger, MIZ-type containing 2	1445 bp upstream