rs29419560 SNP Detail

Summary

• ID
  rs29419560
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69909986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGATCTAT TAGAGGGGGT CACAGTTTAG TTTTGGGGTT
  CACATCTGAG AAAAGGATGG ATTTGGCCAC AGGTGCCTCC TGGAGTGATC ATTTTGTACC
  W
  ATAAGGAAAT GGAGAATCTG GTGTTTGGGG TGGCTTGGTG AGCTTTAGTG TTCACCAGCA
  GTGTTTTGAG GGCAATTTAT TTAAGGAGAA GCCTGCCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38753970	mCV22952505	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	A
ss132363999	ENSMUSSNP2260672	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		A
ss323732611	CHEV_11_69832662	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29419560					SNP	T	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69909986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dlg4	discs large MAGUK scaffold protein 4			Intron
				Noncoding-Transcript-Variant
Rr402685	regulatory region 402685			1635 bp upstream
Rr450197	regulatory region 450197			271 bp distal
Rr450198	regulatory region 450198			1806 bp proximal
Tssr102629	transcription start site region 102629			1952 bp downstream
Tssr102630	transcription start site region 102630			1068 bp downstream
Tssr102631	transcription start site region 102631			761 bp downstream
Tssr102632	transcription start site region 102632			676 bp downstream
Tssr102633	transcription start site region 102633			313 bp downstream