rs29419721 SNP Detail

Summary

• ID
  rs29419721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69300187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATATCATG GTCAAGTCCC CAGTCTCATA CCAAGTTCCT
  CCAGCTCCTC CACTTTCCCC GGCTCTGAGT CTTCAGTATC GGTCGACCCC CTCAGCCAGT
  Y
  CCCCCAGCCC TCTAACTTCT GGGAAGCTGC GCACCGTGGA GTGGCGGCCC CTCTCGCGTG
  GCTCCTGTAT CCTCTGTGCC CTTTCCCTGC CGGGGCCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38752014	mCV22780249	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss132355577	ENSMUSSNP2258782	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss323729420	CHEV_11_69222863	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29419721					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69300187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	1957 bp upstream
Gm72933	predicted gene, 72933	393 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	513 bp upstream
Rr402670	regulatory region 402670	465 bp downstream
Rr402671	regulatory region 402671	within coordinates
Tssr3543	transcription start site region 3543	637 bp upstream
Tssr102456	transcription start site region 102456	417 bp downstream
Tssr102457	transcription start site region 102457	57 bp downstream
Tssr102458	transcription start site region 102458	313 bp upstream
Tssr102459	transcription start site region 102459	333 bp upstream
Tssr102460	transcription start site region 102460	366 bp upstream
Tssr102461	transcription start site region 102461	409 bp upstream
Tssr102462	transcription start site region 102462	437 bp upstream
Tssr102463	transcription start site region 102463	1190 bp upstream
Tssr102464	transcription start site region 102464	1464 bp upstream
Tssr102465	transcription start site region 102465	1583 bp upstream
Tssr102466	transcription start site region 102466	1740 bp upstream
Tssr102467	transcription start site region 102467	1958 bp upstream
Tssr102468	transcription start site region 102468	1994 bp upstream
Tssr108662	transcription start site region 108662	1741 bp upstream
Tssr108663	transcription start site region 108663	1712 bp upstream
Tssr108664	transcription start site region 108664	1530 bp upstream
Tssr108665	transcription start site region 108665	799 bp upstream
Tssr108666	transcription start site region 108666	201 bp upstream
Tssr108667	transcription start site region 108667	31 bp downstream
Tssr108668	transcription start site region 108668	52 bp downstream
Tssr108669	transcription start site region 108669	67 bp downstream
Tssr108670	transcription start site region 108670	186 bp downstream
Tssr108671	transcription start site region 108671	523 bp downstream
Tssr108672	transcription start site region 108672	1007 bp downstream
Tssr108673	transcription start site region 108673	1035 bp downstream
Tssr108674	transcription start site region 108674	1079 bp downstream
Tssr108675	transcription start site region 108675	1246 bp downstream
Tssr108676	transcription start site region 108676	1291 bp downstream
Tssr108677	transcription start site region 108677	1335 bp downstream
Tssr108678	transcription start site region 108678	1351 bp downstream
Tssr108679	transcription start site region 108679	1650 bp downstream