rs29419721 SNP Detail

Summary

• ID
  rs29419721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69300187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATATCATG GTCAAGTCCC CAGTCTCATA CCAAGTTCCT
  CCAGCTCCTC CACTTTCCCC GGCTCTGAGT CTTCAGTATC GGTCGACCCC CTCAGCCAGT
  Y
  CCCCCAGCCC TCTAACTTCT GGGAAGCTGC GCACCGTGGA GTGGCGGCCC CTCTCGCGTG
  GCTCCTGTAT CCTCTGTGCC CTTTCCCTGC CGGGGCCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38752014	mCV22780249	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss132355577	ENSMUSSNP2258782	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss323729420	CHEV_11_69222863	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29419721					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69300187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm72923	predicted gene, 72923			1957 bp upstream
Gm72933	predicted gene, 72933			393 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B			Intron
				mRNA-UTR
Rr369256	regulatory region 369256			513 bp upstream
Rr402670	regulatory region 402670			465 bp downstream
Rr402671	regulatory region 402671			within coordinates
Rr449971	regulatory region 449971			within coordinates
Rr449972	regulatory region 449972			526 bp proximal
Rr449973	regulatory region 449973			1382 bp proximal
Rr449974	regulatory region 449974			1968 bp proximal
Tssr3543	transcription start site region 3543			637 bp upstream
Tssr102456	transcription start site region 102456			417 bp downstream
Tssr102457	transcription start site region 102457			57 bp downstream
Tssr102458	transcription start site region 102458			313 bp upstream
Tssr102459	transcription start site region 102459			333 bp upstream
Tssr102460	transcription start site region 102460			366 bp upstream
Tssr102461	transcription start site region 102461			409 bp upstream
Tssr102462	transcription start site region 102462			437 bp upstream
Tssr102463	transcription start site region 102463			1190 bp upstream
Tssr102464	transcription start site region 102464			1464 bp upstream
Tssr102465	transcription start site region 102465			1583 bp upstream
Tssr102466	transcription start site region 102466			1740 bp upstream
Tssr102467	transcription start site region 102467			1958 bp upstream
Tssr102468	transcription start site region 102468			1994 bp upstream
Tssr108662	transcription start site region 108662			1741 bp upstream
Tssr108663	transcription start site region 108663			1712 bp upstream
Tssr108664	transcription start site region 108664			1530 bp upstream
Tssr108665	transcription start site region 108665			799 bp upstream
Tssr108666	transcription start site region 108666			201 bp upstream
Tssr108667	transcription start site region 108667			31 bp downstream
Tssr108668	transcription start site region 108668			52 bp downstream
Tssr108669	transcription start site region 108669			67 bp downstream
Tssr108670	transcription start site region 108670			186 bp downstream
Tssr108671	transcription start site region 108671			523 bp downstream
Tssr108672	transcription start site region 108672			1007 bp downstream
Tssr108673	transcription start site region 108673			1035 bp downstream
Tssr108674	transcription start site region 108674			1079 bp downstream
Tssr108675	transcription start site region 108675			1246 bp downstream
Tssr108676	transcription start site region 108676			1291 bp downstream
Tssr108677	transcription start site region 108677			1335 bp downstream
Tssr108678	transcription start site region 108678			1351 bp downstream
Tssr108679	transcription start site region 108679			1650 bp downstream