rs29420364 SNP Detail

Summary

• ID
  rs29420364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44510488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC AAGAAGCCTT GGCCCTTTGG
  K
  TTTCTGGAAT GTGTGAGGAG GATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38754020	mCV24316621	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss132082947	ENSMUSSNP3601822	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss323654520	CHEV_11_44433163	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29420364					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44510488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2763	CpG island 2763	1032 bp distal
Cpgi2764	CpG island 2764	111 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	69 bp distal
Ebf1	early B cell factor 1	within coordinates
Rr445654	regulatory region 445654	945 bp distal
Tssr3469	transcription start site region 3469	1156 bp upstream
Tssr3470	transcription start site region 3470	1949 bp upstream
Tssr101038	transcription start site region 101038	1958 bp downstream
Tssr101039	transcription start site region 101039	1774 bp downstream
Tssr101040	transcription start site region 101040	1726 bp downstream
Tssr101041	transcription start site region 101041	1526 bp downstream
Tssr101042	transcription start site region 101042	1457 bp downstream
Tssr101043	transcription start site region 101043	1438 bp downstream
Tssr101044	transcription start site region 101044	1070 bp downstream
Tssr101045	transcription start site region 101045	1489 bp upstream
Tssr101046	transcription start site region 101046	1521 bp upstream
Tssr101047	transcription start site region 101047	1535 bp upstream
Tssr101048	transcription start site region 101048	1550 bp upstream
Tssr107570	transcription start site region 107570	1592 bp upstream