rs29420985 SNP Detail

Summary

• ID
  rs29420985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42310318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGATGTGCTA GTTTCTAAAC CCGTAAAATG GGGTCACTAA
  GGAGTCAACT TTGAGCTAAT ATTGCTTTAA GCGCGGCTTT CTGCACATGG TAGGGACTCT
  Y
  GGTAAATGAC AAGGCTCAGT AGTAGATTTA GGTTGGATAC TGGGGTCCAG GACCCAGTGT
  TGAGTTCTGC CTTTCTACCT CTTCATCAAA GAGTGCCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38754253	mCV23022177	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132042354	ENSMUSSNP1841414	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29420985					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42310318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2743	CpG island 2743	638 bp distal
Cpgi2744	CpG island 2744	336 bp proximal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	266 bp upstream
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	within coordinates
Rr445406	regulatory region 445406	1369 bp proximal
Tssr100974	transcription start site region 100974	210 bp upstream
Tssr100975	transcription start site region 100975	238 bp upstream
Tssr100976	transcription start site region 100976	446 bp upstream
Tssr100977	transcription start site region 100977	946 bp upstream
Tssr100978	transcription start site region 100978	1267 bp upstream
Tssr100979	transcription start site region 100979	1338 bp upstream
Tssr100980	transcription start site region 100980	1742 bp upstream
Tssr100981	transcription start site region 100981	1767 bp upstream
Tssr100982	transcription start site region 100982	1794 bp upstream
Tssr100983	transcription start site region 100983	1831 bp upstream