rs29421425 SNP Detail

Summary

• ID
  rs29421425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82961883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGAAGT GCACCCCAAA
  TAATCCCTTC CCTCTCCACT TGCACTTTGG TATTGATGTT TCATCTCATT GATAGAAACT
  AACCAGTATC CCCCAGAGCT GTGTCTCTAG TTGTATATGT AGCAGAGGAT GGTCTAGTCG
  GCCATTGTAT TAGTCAGGGT TCTCTAGAGT CACAGAACTT ATGGATAGTC TCTAGATAGT
  R
  AAGGAATTTA TTGATGACTT ACAGTCGGCA GCCCAATTCC CAACAATGGT TCAGTCGCAG
  CTGTGAATGG AAGTCCAAGG ATCTAGCAGT TACTCAGTCT CACGCAGCAA GCAGGCGAAG
  GAGCAAGAGC TCGAGCTAGA CTCCCTTCTT CCAATGTCCT TATATTGTCT CCAGCAGAAG
  GTGGAGCCCA GATTAAAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38755206	mCV24260316	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss132466474	ENSMUSSNP4658741	ENSEMBL	ENSEMBL_Sanger	f	SNP				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29421425					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82961883 () rs orientation: forward

Symbol	Name	Function Class
Rr452898	regulatory region 452898	1955 bp distal
Slfn2	schlafen 2	379 bp downstream
Tssr103643	transcription start site region 103643	1761 bp downstream
Tssr103644	transcription start site region 103644	1708 bp downstream
Tssr103645	transcription start site region 103645	1537 bp downstream
Tssr103646	transcription start site region 103646	1463 bp downstream
Tssr103647	transcription start site region 103647	1307 bp downstream
Tssr103648	transcription start site region 103648	1227 bp downstream
Tssr103649	transcription start site region 103649	1179 bp downstream