rs29421554 SNP Detail

Summary

• ID
  rs29421554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115052163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA AGCGTGCACG GGCTTTTTCT
  Y
  CAGCACACAC GAGCAGTGGG GCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38751321	mCV22627606	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss132871962	ENSMUSSNP5383710	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29421554					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115052163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1583 bp proximal
Gm72084	predicted gene, 72084	908 bp downstream
Rab37	RAB37, member RAS oncogene family	within coordinates
Rr369433	regulatory region 369433	1506 bp upstream
Rr403111	regulatory region 403111	1725 bp upstream
Rr459780	regulatory region 459780	1123 bp distal
Rr459781	regulatory region 459781	257 bp distal
Rr459782	regulatory region 459782	120 bp proximal
Rr459783	regulatory region 459783	1514 bp proximal
Tssr105840	transcription start site region 105840	1996 bp upstream
Tssr111730	transcription start site region 111730	1792 bp downstream