rs29421575 SNP Detail

Summary

• ID
  rs29421575
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121153174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATACACAT GAAATAGAAT
  AAATTTAAAA TGACATTTAT TGCCAGGTGT AGTGGTACAC ACCTTTAATT CCAGTACTTA
  AGAGGCAGAG GCAGGTGGAT CTCTGAGTTC AAGGACAGCC TGCTCTACGT AGAAAGTTCA
  TTTTGTTTAT ATCTGTGCCT TGCTTGCATT TGCTACAGCA CAATGGAGGC CAGAGGACAA
  S
  TTGCTGGAGT CAGTTCTTTC CGCTGTGTGG GTCCTGGGTG TCAGACTCAG ATCATCAGAT
  GTGGCAGCAT GGGCCCTTAC CAGTAATTTG TCTTGCTGGC CTACAAGCTA TTTTTTATTG
  TTATTTTTAA ATTTCAAATT AAATTAAAAA CTTAGATTAA AACTTGTGAG TATGTGTCTG
  TGTTGGCGTG TACACGTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss38753924	mCV24194210	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss132910517	ENSMUSSNP6321823	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs29421575					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121153174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4342	CpG island 4342			1323 bp distal
Foxk2	forkhead box K2			Intron
				Noncoding-Transcript-Variant
Tssr106400	transcription start site region 106400			1148 bp downstream