rs29421861 SNP Detail

Summary

• ID
  rs29421861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85060716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTACCAACA TGGTTGTCCT TAGCTGTGAA ATAATCCTCA
  GGGAGCAGGT CTTCCAAAGT GAAGCAGAGA AGTAGGGACT TTGATTGTCC CCATCTCCTC
  Y
  CCACAATTTG CTAAACATAA TAGTACAGAG AATAGTTTAT TTCTGGACAG AAAAGGAACT
  CGCCCCAAAC CCCAGGGTCT CCTGGCCTGT CCAGCCTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38755976	mCV24662587	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss132490445	ENSMUSSNP2556751	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29421861					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85060716 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	514 bp upstream
Cpgi3451	CpG island 3451	214 bp proximal
Gm73307	predicted gene, 73307	within coordinates
Rr453329	regulatory region 453329	55 bp proximal
Rr453330	regulatory region 453330	328 bp proximal
Rr453331	regulatory region 453331	525 bp proximal
Tssr3620	transcription start site region 3620	1178 bp upstream
Tssr103818	transcription start site region 103818	1184 bp upstream
Tssr103819	transcription start site region 103819	1207 bp upstream