rs29421870 SNP Detail

Summary

• ID
  rs29421870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75480824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCTTGGGT GCCAGTGTTC TCCAAGGAGA ACATGGTGCG
  CTCTGCATTT TAACCCATAG TCTCCAAACG AACGAACGAG TTCTTCTCAC TTTTCAGATT
  W
  AAAAAAATCT CACTTGAATC CTACAGTCTG TAGAAATGTG TAGTTTTGTA AAGGTCAAAC
  TGGGGAAAGA AAGGCCTTTT GAGGAGACAA GTGAGCCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38755770	mCV22728605	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	T
ss132438713	ENSMUSSNP4555082	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		T
ss323751092	CHEV_11_75403500	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29421870					SNP	T	T	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75480824 () rs orientation: forward

Symbol	Name	Function Class
4931413K12Rik	RIKEN cDNA 4931413K12 gene	26 bp downstream
Cpgi3269	CpG island 3269	1153 bp distal
Gm53686	predicted gene, 53686	within coordinates
Pitpna	phosphatidylinositol transfer protein, alpha	within coordinates
Rr402732	regulatory region 402732	1790 bp downstream
Rr451215	regulatory region 451215	1891 bp distal
Rr451216	regulatory region 451216	709 bp distal
Tssr102991	transcription start site region 102991	1847 bp downstream
Tssr102992	transcription start site region 102992	1821 bp downstream