rs29421925 SNP Detail

Summary

• ID
  rs29421925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3074212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTCTGGCACT GTTCCCTGTT CCTGGAAACA GGGAGTGGAG AAGCTTCTCG ATTGGAAGCC
  GCTGTCGTCA ATTGTGGCCG AGCGGGCGGG ACTTCCTGCC AAGCCCCCCA GAGTCTCTCT
  GCTGCCGCCG CAAGCGCCGC TGGCCCGGGG ACCACAGATT GGAAGCAGGC AGTCACTGGT
  CGTGGACAGG AAGACTCTCT CCGGCCATCT CAGGTCAGTG CAGGCTCGGG CATGCCCCTG
  CCTCAGCCCC GAGGCATGCT GGGAGTTGTA GTTCTGTCCT GGCTTTGGTT CCTCTGAGCC
  Y
  CGCCCCCCAT TTTTTTCTTT TTTGTTCCTT TTTTTCCGAG ACTGGGTTGT TATTTTTTTC
  TAATTATTTT TATTTTTAAT AAATTTTGAA TGTTTAATAT TCCTCTATCT ATCTATCTAT
  CCATCTATCT ATCTATTCAT TTTTTATTGA AGTTAGTTTT GGTTTTTCCC AGACTTGGTG
  TCTCCCGGCT TAACCCTGAG ACGGTTGCCC TGGCGTGCCA CCCGGTGGTG ACAGGTTGTC
  ACTGCAACGT TCCAATTTTT TTTTTTTTTT TTGGTTTTTT TCAAGACGGT ATTTTTTTTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38757787	mCV23826165	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss131630086	ENSMUSSNP6945465	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29421925					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3074212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	76 bp distal
Gm74511	predicted gene, 74511	within coordinates
Pisd-ps1	phosphatidylserine decarboxylase, pseudogene 1	1794 bp upstream
Rr369110	regulatory region 369110	204 bp downstream
Rr441449	regulatory region 441449	1468 bp distal
Rr441450	regulatory region 441450	181 bp distal
Rr441451	regulatory region 441451	865 bp distal
Rr441452	regulatory region 441452	706 bp distal
Rr441453	regulatory region 441453	within coordinates
Rr441454	regulatory region 441454	212 bp proximal
Rr441455	regulatory region 441455	435 bp proximal
Rr441456	regulatory region 441456	1251 bp proximal
Tssr100004	transcription start site region 100004	181 bp downstream
Tssr100005	transcription start site region 100005	158 bp downstream
Tssr106442	transcription start site region 106442	292 bp upstream