rs29422171 SNP Detail

Summary

• ID
  rs29422171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68919735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGTTTCGGG CTAGCTAGAG ATGCACAGTG AGACCTTGCC TCAGAAACAA ACACACAAAC
  AGAACAAAAC AAAAGAGGGT GGTATGTATG GACCTGGAGA CTGCTCAGTG GTTAAGAGCA
  CTGGCTATTC TTTCAGAAGG TCCTAAGTTC AATTCAGAGG TCCTGAGTTC AATTCCCAGA
  TACCACATGG TGGATCACAA TTCTTTCTTT GAATTATTTC ATTTATTTTG TGTATGAGTA
  CACTATAGGT ATCTTCAGAC ATACCAGAAG GGGGCATCAG ATCCCATTAC AGAGTGTTGT
  R
  AGCCACAATG TGGTTGCTGG GAATTGAACT CAGGACTTCT GAAGAGCAGC CAATGCTCTT
  AACCAGTTGA GCCCTCTCTC CAGCCCCTGC AACTCTCTAT GAAGGGATCT GATGCCCTCT
  TCTGGAATAC AGGTGCATAC ACAGACAGAG CGACTCATCC GTTAGAGAGT GGTGACCTGA
  GCTTGTTCCC AGACTCTGCA TGGTGAGAGA AGAGAGCTGA CTCCCACAAG TTGTCCTTTG
  ACCTCCACAA AAGTGAAATG ATACCCCCCA CCCCCAGTAA ATGTAATAAA ACAAGCTCCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38762191	mCV23351354	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss132347505	ENSMUSSNP412616	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323727071	CHEV_11_68842411	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29422171					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68919735 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	within coordinates
Rr251243	regulatory region 251243	335 bp distal
Rr251244	regulatory region 251244	866 bp proximal
Rr251245	regulatory region 251245	1866 bp proximal
Rr253641	regulatory region 253641	within coordinates
Rr386226	regulatory region 386226	783 bp downstream
Tssr102360	transcription start site region 102360	1786 bp downstream
Tssr102361	transcription start site region 102361	1573 bp downstream
Tssr102362	transcription start site region 102362	1550 bp downstream
Tssr102363	transcription start site region 102363	927 bp downstream